STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ95653.1Uncharacterized conserved protein YbbC, DUF1343 family. (415 aa)    
Predicted Functional Partners:
SEQ34146.1
CubicO group peptidase, beta-lactamase class C family.
 
 0.989
SER19536.1
CubicO group peptidase, beta-lactamase class C family.
 
 0.984
SEP88039.1
Beta-glucosidase.
 
 0.918
SER28122.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.880
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
    0.657
SEQ95682.1
DNA polymerase-3 subunit epsilon.
       0.561
SEQ85484.1
CubicO group peptidase, beta-lactamase class C family.
 
    0.490
SER36836.1
BadF-type ATPase.
  
    0.484
SEP61450.1
Muramoyltetrapeptide carboxypeptidase.
  
     0.453
SEQ95626.1
Hypothetical protein.
       0.441
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.