SEQ97547.1 protein (Lewinella agarilytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEQ97547.1

acyl-CoA dehydrogenase. (404 aa)

Predicted Functional Partners:

SEQ97523.1

0.995

SEQ82442.1

0.982

SEQ33939.1

0.941

SER22899.1

0.928

SER22911.1

0.890

SEQ16703.1

0.837

SEQ33907.1

0.837

SEQ82430.1

0.837

SEP56435.1

0.786

SER07858.1

0.752

Your Current Organism:

Lewinella agarilytica

NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEP56435.1	SEQ16703.1	SAMN05444359_10146	SAMN05444359_106126	Acetyl-CoA carboxylase, carboxyltransferase component.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.420
SEP56435.1	SEQ33907.1	SAMN05444359_10146	SAMN05444359_108118	Acetyl-CoA carboxylase, carboxyltransferase component.	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.420
SEP56435.1	SEQ33939.1	SAMN05444359_10146	SAMN05444359_108119	Acetyl-CoA carboxylase, carboxyltransferase component.	3-hydroxyacyl-CoA dehydrogenase.	0.890
SEP56435.1	SEQ82430.1	SAMN05444359_10146	SAMN05444359_116107	Acetyl-CoA carboxylase, carboxyltransferase component.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.420
SEP56435.1	SEQ82442.1	SAMN05444359_10146	SAMN05444359_116108	Acetyl-CoA carboxylase, carboxyltransferase component.	Short chain enoyl-CoA hydratase.	0.890
SEP56435.1	SEQ97547.1	SAMN05444359_10146	SAMN05444359_12074	Acetyl-CoA carboxylase, carboxyltransferase component.	acyl-CoA dehydrogenase.	0.786
SEP56435.1	SER07858.1	SAMN05444359_10146	SAMN05444359_12357	Acetyl-CoA carboxylase, carboxyltransferase component.	glutaryl-CoA dehydrogenase.	0.660
SEQ16703.1	SEP56435.1	SAMN05444359_106126	SAMN05444359_10146	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyl-CoA carboxylase, carboxyltransferase component.	0.420
SEQ16703.1	SEQ33907.1	SAMN05444359_106126	SAMN05444359_108118	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.811
SEQ16703.1	SEQ33939.1	SAMN05444359_106126	SAMN05444359_108119	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase.	0.999
SEQ16703.1	SEQ82430.1	SAMN05444359_106126	SAMN05444359_116107	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.825
SEQ16703.1	SEQ82442.1	SAMN05444359_106126	SAMN05444359_116108	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Short chain enoyl-CoA hydratase.	0.999
SEQ16703.1	SEQ97547.1	SAMN05444359_106126	SAMN05444359_12074	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase.	0.837
SEQ16703.1	SER07858.1	SAMN05444359_106126	SAMN05444359_12357	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	glutaryl-CoA dehydrogenase.	0.538
SEQ16703.1	SER22899.1	SAMN05444359_106126	SAMN05444359_12912	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Electron transfer flavoprotein alpha subunit apoprotein.	0.481
SEQ33907.1	SEP56435.1	SAMN05444359_108118	SAMN05444359_10146	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyl-CoA carboxylase, carboxyltransferase component.	0.420
SEQ33907.1	SEQ16703.1	SAMN05444359_108118	SAMN05444359_106126	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.811
SEQ33907.1	SEQ33939.1	SAMN05444359_108118	SAMN05444359_108119	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase.	0.999
SEQ33907.1	SEQ82430.1	SAMN05444359_108118	SAMN05444359_116107	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.819
SEQ33907.1	SEQ82442.1	SAMN05444359_108118	SAMN05444359_116108	acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Short chain enoyl-CoA hydratase.	0.999