STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ99735.1SusD family protein. (532 aa)    
Predicted Functional Partners:
SEQ99766.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.912
SEQ06528.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.760
SEQ64574.1
Outer membrane receptor proteins, mostly Fe transport.
  
 
   0.720
SEQ53177.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.714
SER10361.1
Hypothetical protein.
  
 
   0.702
SEQ24485.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.700
SEQ66031.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.700
SEQ47168.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.672
SEQ47204.1
Starch-binding associating with outer membrane.
  
 
   0.664
SEQ00984.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.658
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.