STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER04395.1Chemotaxis protein MotB. (261 aa)    
Predicted Functional Partners:
SEQ70462.1
Hypothetical protein.
  
 
 0.801
SER04627.1
Outer membrane protein OmpA.
  
 
  0.723
SER42420.1
NitT/TauT family transport system substrate-binding protein.
 
 
 0.646
SER04427.1
Smr domain-containing protein.
 
     0.642
SEP79285.1
PAS domain S-box-containing protein.
  
  
 0.631
SER23613.1
PAS domain S-box-containing protein.
  
  
 0.631
SEQ97229.1
Outer membrane protein OmpA.
  
 
  0.545
SEP66956.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 
   0.532
SEP78069.1
Outer membrane protein OmpA.
  
 
  0.521
SEQ17846.1
Thrombospondin type 3 repeat-containing protein.
  
 
 0.520
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.