STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER07654.1Hypothetical protein. (254 aa)    
Predicted Functional Partners:
SER09934.1
Oxygen tolerance.
 
   0.892
SER10270.1
Hypothetical protein.
 
     0.775
SER10177.1
Ca-activated chloride channel family protein.
 
     0.758
SER10148.1
Tetratricopeptide repeat-containing protein.
 
  0.749
SEQ93124.1
Cytochrome c-type biogenesis protein CcmF.
  
 
 0.745
SER44556.1
Protein of unknown function DUF58.
 
     0.742
SER10237.1
Ca-activated chloride channel family protein.
 
     0.675
SER28328.1
Tetratricopeptide repeat-containing protein.
  
  0.664
SEQ24151.1
Adenylate cyclase, class 3; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
  
  0.653
SER07684.1
Lipopolysaccharide transport protein LptA.
 
     0.609
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.