SER15595.1 protein (Lewinella agarilytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SER15595.1

Por secretion system C-terminal sorting domain-containing protein. (645 aa)

Predicted Functional Partners:

SER15620.1

0.938

SEP63375.1

0.775

SEQ34701.1

0.775

SEQ51754.1

0.775

SEQ64625.1

0.775

SER17019.1

0.775

SER15569.1

0.631

Your Current Organism:

Lewinella agarilytica

NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEP63375.1	SER15595.1	SAMN05444359_101312	SAMN05444359_1262	Protein of unknown function.	Por secretion system C-terminal sorting domain-containing protein.	0.775
SEQ34701.1	SER15595.1	SAMN05444359_108146	SAMN05444359_1262	Uncharacterized conserved protein, DUF1800 family.	Por secretion system C-terminal sorting domain-containing protein.	0.775
SEQ51754.1	SER15595.1	SAMN05444359_11141	SAMN05444359_1262	Protein of unknown function.	Por secretion system C-terminal sorting domain-containing protein.	0.775
SEQ64625.1	SER15595.1	SAMN05444359_11355	SAMN05444359_1262	Uncharacterized conserved protein, DUF1800 family.	Por secretion system C-terminal sorting domain-containing protein.	0.775
SER15569.1	SER15595.1	SAMN05444359_1261	SAMN05444359_1262	Hypothetical protein.	Por secretion system C-terminal sorting domain-containing protein.	0.631
SER15569.1	SER15620.1	SAMN05444359_1261	SAMN05444359_1263	Hypothetical protein.	Protein of unknown function.	0.602
SER15595.1	SEP63375.1	SAMN05444359_1262	SAMN05444359_101312	Por secretion system C-terminal sorting domain-containing protein.	Protein of unknown function.	0.775
SER15595.1	SEQ34701.1	SAMN05444359_1262	SAMN05444359_108146	Por secretion system C-terminal sorting domain-containing protein.	Uncharacterized conserved protein, DUF1800 family.	0.775
SER15595.1	SEQ51754.1	SAMN05444359_1262	SAMN05444359_11141	Por secretion system C-terminal sorting domain-containing protein.	Protein of unknown function.	0.775
SER15595.1	SEQ64625.1	SAMN05444359_1262	SAMN05444359_11355	Por secretion system C-terminal sorting domain-containing protein.	Uncharacterized conserved protein, DUF1800 family.	0.775
SER15595.1	SER15569.1	SAMN05444359_1262	SAMN05444359_1261	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.631
SER15595.1	SER15620.1	SAMN05444359_1262	SAMN05444359_1263	Por secretion system C-terminal sorting domain-containing protein.	Protein of unknown function.	0.938
SER15595.1	SER17019.1	SAMN05444359_1262	SAMN05444359_12660	Por secretion system C-terminal sorting domain-containing protein.	Protein of unknown function.	0.775
SER15620.1	SER15569.1	SAMN05444359_1263	SAMN05444359_1261	Protein of unknown function.	Hypothetical protein.	0.602
SER15620.1	SER15595.1	SAMN05444359_1263	SAMN05444359_1262	Protein of unknown function.	Por secretion system C-terminal sorting domain-containing protein.	0.938
SER17019.1	SER15595.1	SAMN05444359_12660	SAMN05444359_1262	Protein of unknown function.	Por secretion system C-terminal sorting domain-containing protein.	0.775