SER18870.1 protein (Lewinella agarilytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SER18870.1

Catechol 2,3-dioxygenase. (167 aa)

Predicted Functional Partners:

SEP95170.1

0.704

SEQ76425.1

0.704

SEP89966.1

0.538

trpB

0.496

SEQ38740.1

0.496

SEP68166.1

0.494

SER24786.1

0.484

SEQ31346.1

0.469

SER43886.1

0.469

SER43520.1

0.469

Your Current Organism:

Lewinella agarilytica

NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEP68166.1	SER18870.1	SAMN05444359_101454	SAMN05444359_12721	Cytochrome C oxidase subunit IV.	Catechol 2,3-dioxygenase.	0.494
SEP89966.1	SER18870.1	SAMN05444359_103186	SAMN05444359_12721	Aldo/keto reductase.	Catechol 2,3-dioxygenase.	0.538
SEP95170.1	SEQ76425.1	SAMN05444359_10437	SAMN05444359_11585	Heterodimeric methylmalonyl-CoA mutase large subunit precursor.	Methylmalonyl-CoA mutase.	0.999
SEP95170.1	SER18870.1	SAMN05444359_10437	SAMN05444359_12721	Heterodimeric methylmalonyl-CoA mutase large subunit precursor.	Catechol 2,3-dioxygenase.	0.704
SEQ31346.1	SER18870.1	SAMN05444359_10835	SAMN05444359_12721	Glyoxylase, beta-lactamase superfamily II.	Catechol 2,3-dioxygenase.	0.469
SEQ31346.1	SER43520.1	SAMN05444359_10835	SAMN05444359_1435	Glyoxylase, beta-lactamase superfamily II.	Glyoxylase, beta-lactamase superfamily II.	0.886
SEQ31346.1	SER43886.1	SAMN05444359_10835	SAMN05444359_14318	Glyoxylase, beta-lactamase superfamily II.	Glyoxylase, beta-lactamase superfamily II.	0.915
SEQ38740.1	SER18870.1	SAMN05444359_10921	SAMN05444359_12721	4Fe-4S dicluster domain-containing protein.	Catechol 2,3-dioxygenase.	0.496
SEQ76425.1	SEP95170.1	SAMN05444359_11585	SAMN05444359_10437	Methylmalonyl-CoA mutase.	Heterodimeric methylmalonyl-CoA mutase large subunit precursor.	0.999
SEQ76425.1	SER18870.1	SAMN05444359_11585	SAMN05444359_12721	Methylmalonyl-CoA mutase.	Catechol 2,3-dioxygenase.	0.704
SER18870.1	SEP68166.1	SAMN05444359_12721	SAMN05444359_101454	Catechol 2,3-dioxygenase.	Cytochrome C oxidase subunit IV.	0.494
SER18870.1	SEP89966.1	SAMN05444359_12721	SAMN05444359_103186	Catechol 2,3-dioxygenase.	Aldo/keto reductase.	0.538
SER18870.1	SEP95170.1	SAMN05444359_12721	SAMN05444359_10437	Catechol 2,3-dioxygenase.	Heterodimeric methylmalonyl-CoA mutase large subunit precursor.	0.704
SER18870.1	SEQ31346.1	SAMN05444359_12721	SAMN05444359_10835	Catechol 2,3-dioxygenase.	Glyoxylase, beta-lactamase superfamily II.	0.469
SER18870.1	SEQ38740.1	SAMN05444359_12721	SAMN05444359_10921	Catechol 2,3-dioxygenase.	4Fe-4S dicluster domain-containing protein.	0.496
SER18870.1	SEQ76425.1	SAMN05444359_12721	SAMN05444359_11585	Catechol 2,3-dioxygenase.	Methylmalonyl-CoA mutase.	0.704
SER18870.1	SER24786.1	SAMN05444359_12721	SAMN05444359_13019	Catechol 2,3-dioxygenase.	Protein of unknown function.	0.484
SER18870.1	SER43520.1	SAMN05444359_12721	SAMN05444359_1435	Catechol 2,3-dioxygenase.	Glyoxylase, beta-lactamase superfamily II.	0.469
SER18870.1	SER43886.1	SAMN05444359_12721	SAMN05444359_14318	Catechol 2,3-dioxygenase.	Glyoxylase, beta-lactamase superfamily II.	0.469
SER18870.1	trpB	SAMN05444359_12721	SAMN05444359_10536	Catechol 2,3-dioxygenase.	Tryptophan synthase, beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.	0.496