STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SER41504.1Beta-carotene 3-hydroxylase. (166 aa)    
Predicted Functional Partners:
SEQ32266.1
Phytoene/squalene synthetase.
 
 0.938
SEQ32296.1
Phytoene desaturase.
 
   
 0.796
SEP86680.1
Phytoene desaturase.
 
   
 0.748
SER41529.1
Hypothetical protein.
       0.682
SER01413.1
Protein of unknown function.
   
 0.635
SER30724.1
Lycopene beta-cyclase.
    
 0.613
SEP78575.1
Alkane 1-monooxygenase.
  
 
 0.520
SEP90167.1
Omega-6 fatty acid desaturase (delta-12 desaturase).
  
 
 0.520
SER34653.1
Diacylglycerol kinase catalytic domain-containing protein.
   
 0.496
SEP76770.1
Conserved hypothetical protein.
     
 0.487
Your Current Organism:
Lewinella agarilytica
NCBI taxonomy Id: 478744
Other names: DSM 24740, JBRI 2009, JCM 14216, KCTC 12774, L. agarilytica, Lewinella agarilytica Lee 2007, strain SST-19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.