Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AOE61060.1ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)    
Predicted Functional Partners:
AOE60420.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.766
AOE65314.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
AOE61061.1
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.602
AOE61062.1
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.550
AOE61063.1
Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.528
AOE61064.1
Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.494
Your Current Organism:
Pseudomonas corrugata
NCBI taxonomy Id: 47879
Other names: ATCC 29736, CCUG 23367, CCUG 32778, CFBP 2431, CIP 105514, DSM 7228, ICMP 5819, LMG 2172, LMG:2172, NCPPB 2445, P. corrugata
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