Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AOE61697.1Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
AOE61696.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.922
AOE64526.1
Type I secretion target; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.653
AOE61662.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.635
AOE64358.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 0.621
AOE62689.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.601
AOE62688.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.594
AOE61972.1
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
AOE60703.1
Polyurethanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.580
AOE63716.1
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
AOE60709.1
Serine 3-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
Your Current Organism:
Pseudomonas corrugata
NCBI taxonomy Id: 47879
Other names: ATCC 29736, CCUG 23367, CCUG 32778, CFBP 2431, CIP 105514, DSM 7228, ICMP 5819, LMG 2172, LMG:2172, NCPPB 2445, P. corrugata
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