STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOE63317.1Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)    
Predicted Functional Partners:
AOE64402.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.859
AOE64201.1
Phage baseplate protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.760
AOE62252.1
Phospholipid-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.757
AOE64208.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.755
AOE64148.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.726
trpS
tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.678
AOE63799.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
AOE64225.1
Baseplate J protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.678
AOE64452.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.667
AOE63439.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.610
Your Current Organism:
Pseudomonas corrugata
NCBI taxonomy Id: 47879
Other names: ATCC 29736, CCUG 23367, CCUG 32778, CFBP 2431, CIP 105514, DSM 7228, ICMP 5819, LMG 2172, LMG:2172, NCPPB 2445, P. corrugata
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.