STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOE65022.1AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)    
Predicted Functional Partners:
AOE65087.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
dnaE2
DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
 
     0.566
AOE65021.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.554
AOE65025.1
DNA repair nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.551
AOE65020.1
Alanine racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.535
lexA-2
LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.529
AOE65024.1
CDP-6-deoxy-delta-3,4-glucoseen reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.490
AOE60678.1
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
AOE60907.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.435
AOE65180.1
Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.433
Your Current Organism:
Pseudomonas corrugata
NCBI taxonomy Id: 47879
Other names: ATCC 29736, CCUG 23367, CCUG 32778, CFBP 2431, CIP 105514, DSM 7228, ICMP 5819, LMG 2172, LMG:2172, NCPPB 2445, P. corrugata
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.