STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV07343.1DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (347 aa)    
Predicted Functional Partners:
ACV07026.1
Site-specific recombinase, DNA invertase Pin; PFAM: Resolvase, N terminal domain; Recombinase.
 
     0.605
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.589
ACV07340.1
Hypothetical protein.
 
     0.576
ACV07341.1
Uncharacterized conserved protein.
 
     0.575
ACV07342.1
Hypothetical protein.
       0.551
ACV05736.1
Hypothetical protein.
  
  
 0.548
ACV07339.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
  
    0.493
ACV05723.1
PFAM: ParB-like nuclease domain.
 
   
 0.477
ACV05636.1
PFAM: Bacterial regulatory proteins, gntR family.
   
  
 0.460
ACV05719.1
PFAM: Domain of unknown function (DUF955).
 
     0.460
Your Current Organism:
Kytococcus sedentarius
NCBI taxonomy Id: 478801
Other names: K. sedentarius DSM 20547, Kytococcus sedentarius DSM 20547, Kytococcus sedentarius str. DSM 20547, Kytococcus sedentarius strain DSM 20547
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