STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_6134Heterogeneous nuclear ribonucleoprotein D0. (238 aa)    
Predicted Functional Partners:
AV274_3816
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
  
 0.941
AV274_6287
Nuclear cap-binding protein subunit 2.
  
 
 0.933
AV274_5908
Polyadenylate-binding protein 1-B.
  
 0.920
AV274_0926
Small nuclear ribonucleoprotein G.
   
 0.911
AV274_6078
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.910
AV274_2112
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.910
AV274_5293
Cleavage stimulation factor.
  
 
 0.901
AV274_3422
MIF4G_like domain-containing protein.
    
 0.897
AV274_0583
Splicing factor 3B subunit 4.
  
 
 0.895
AV274_1645
Splicing factor 3B subunit 4.
  
 
 0.892
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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