STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_5897Homeobox protein PKNOX2. (569 aa)    
Predicted Functional Partners:
AV274_3860
HECT E3 ubiquitin ligase.
    
 0.857
AV274_0115
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
    
 
 0.743
AV274_4782
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.735
AV274_3997
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.735
AV274_0954
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.735
AV274_4814
Histone deacetylase.
    
 0.685
AV274_0896
Histone deacetylase.
    
 0.685
AV274_6545
Uncharacterized protein.
    
 0.616
AV274_2982
Zn-finger protein.
    
 0.616
AV274_6281
Glycosyltransferase-like domain-containing protein.
    
 0.616
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.