STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_5860Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family. (224 aa)    
Predicted Functional Partners:
AV274_5815
Synaptobrevin-like protein; Belongs to the synaptobrevin family.
    
 0.999
AV274_4236
Syntaxin-like protein; Belongs to the syntaxin family.
   
 0.999
AV274_4172
V-SNARE protein.
    
 
 0.998
AV274_3255
t-SNARE coiled-coil homology domain-containing protein.
   
 0.998
AV274_5727
SEC1 family transport protein SLY1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.997
AV274_3714
Alpha-soluble NSF attachment protein 2.
   
 0.997
AV274_0067
Syntaxin-7-like protein.
    
 0.997
AV274_4431
Syntaxin.
    
 0.993
AV274_6452
Sec24g.
   
 0.991
AV274_0766
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.991
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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