STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_5781Zinc finger protein. (163 aa)    
Predicted Functional Partners:
AV274_6078
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
AV274_3816
U1 small nuclear ribonucleoprotein 70 kDa-like protein.
   
 0.999
AV274_2674
Small nuclear ribonucleoprotein-associated protein.
   
 0.999
AV274_2112
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.999
AV274_0926
Small nuclear ribonucleoprotein G.
   
 0.999
AV274_3476
Leucine-rich repeat-containing protein.
   
 
 0.998
AV274_2348
DEAD/DEAH box RNA helicase; Belongs to the DEAD box helicase family.
    
 0.997
AV274_6164
Splicing factor 3B subunit 2.
   
 0.995
AV274_4338
Uncharacterized protein.
    
 
 0.994
AV274_2328
Small nuclear ribonucleoprotein Sm D2.
   
 0.994
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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