STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_6413E3 ubiquitin-protein ligase. (377 aa)    
Predicted Functional Partners:
AV274_4960
ATP-dependent DNA helicase MPH1.
    
 0.999
AV274_3671
Fe-S protein assembly chaperone HscA.
    
 0.999
AV274_1720
Uncharacterized protein.
    
 0.998
AV274_3496
DNA repair endonuclease ERCC1.
    
 0.995
AV274_0945
Peptidyl-tRNA hydrolase.
    
 0.995
AV274_5991
Nuclear transport factor 2.
    
 0.993
AV274_4911
DNA repair protein RAD1.
    
 0.978
AV274_0144
MUS81, Subunit of structure-specific Mms4p-Mus81p endonuclease.
    
 0.967
AV274_1444
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
    
 0.917
AV274_4690
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
 0.909
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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