Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AV274_0322 | AV274_4291 | A0A196SQD2 | A0A196SDF1 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. | 0.999 |
AV274_0322 | AV274_5172 | A0A196SQD2 | A0A196S808 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | MRE11, DNA repair exonuclease. | 0.408 |
AV274_0322 | AV274_5703 | A0A196SQD2 | A0A196S8C2 | H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. | Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. | 0.626 |
AV274_1366 | AV274_2633 | A0A196SL46 | A0A196SF71 | DNA replication ATP-dependent helicase. | RAD50, DNA repair protein. | 0.844 |
AV274_1366 | AV274_2883 | A0A196SL46 | A0A196SGE9 | DNA replication ATP-dependent helicase. | Replication factor C subunit 3. | 0.882 |
AV274_1366 | AV274_4789 | A0A196SL46 | A0A196SBN2 | DNA replication ATP-dependent helicase. | DNA polymerase. | 0.942 |
AV274_1366 | AV274_5040 | A0A196SL46 | A0A196SAB8 | DNA replication ATP-dependent helicase. | Uncharacterized protein. | 0.628 |
AV274_1366 | AV274_5172 | A0A196SL46 | A0A196S808 | DNA replication ATP-dependent helicase. | MRE11, DNA repair exonuclease. | 0.959 |
AV274_1366 | AV274_5703 | A0A196SL46 | A0A196S8C2 | DNA replication ATP-dependent helicase. | Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. | 0.634 |
AV274_2633 | AV274_1366 | A0A196SF71 | A0A196SL46 | RAD50, DNA repair protein. | DNA replication ATP-dependent helicase. | 0.844 |
AV274_2633 | AV274_2883 | A0A196SF71 | A0A196SGE9 | RAD50, DNA repair protein. | Replication factor C subunit 3. | 0.821 |
AV274_2633 | AV274_4789 | A0A196SF71 | A0A196SBN2 | RAD50, DNA repair protein. | DNA polymerase. | 0.859 |
AV274_2633 | AV274_5172 | A0A196SF71 | A0A196S808 | RAD50, DNA repair protein. | MRE11, DNA repair exonuclease. | 0.999 |
AV274_2633 | AV274_5703 | A0A196SF71 | A0A196S8C2 | RAD50, DNA repair protein. | Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. | 0.746 |
AV274_2665 | AV274_5703 | A0A196SH04 | A0A196S8C2 | Uncharacterized protein. | Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. | 0.643 |
AV274_2883 | AV274_1366 | A0A196SGE9 | A0A196SL46 | Replication factor C subunit 3. | DNA replication ATP-dependent helicase. | 0.882 |
AV274_2883 | AV274_2633 | A0A196SGE9 | A0A196SF71 | Replication factor C subunit 3. | RAD50, DNA repair protein. | 0.821 |
AV274_2883 | AV274_4291 | A0A196SGE9 | A0A196SDF1 | Replication factor C subunit 3. | Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. | 0.409 |
AV274_2883 | AV274_4789 | A0A196SGE9 | A0A196SBN2 | Replication factor C subunit 3. | DNA polymerase. | 0.952 |
AV274_2883 | AV274_5172 | A0A196SGE9 | A0A196S808 | Replication factor C subunit 3. | MRE11, DNA repair exonuclease. | 0.887 |
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