STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_5680Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (426 aa)    
Predicted Functional Partners:
AV274_1227
Spermine/spermidine synthase; Belongs to the spermidine/spermine synthase family.
  
 0.874
AV274_1281
Homoserine dehydrogenase.
  
 
 0.860
AV274_3918
Iron hydrogenase assembly protein, HydE.
    
 0.852
AV274_1291
Agmatine deiminase.
    
 0.852
AV274_5155
Glutamine synthetase; Belongs to the glutamine synthetase family.
  
 
 0.841
AV274_3170
N-carbamoylputrescine amidase.
    
 0.790
AV274_2034
Omega-amidase NIT2.
    
 0.790
AV274_6571
Fructokinase.
    
 0.782
AV274_5631
Aspartate aminotransferase.
  
 
 0.782
AV274_6417
S-adenosylmethionine decarboxylase proenzyme.
 
  
 
 0.776
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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