STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_4937GXX repeat-containing protein collagen superfamily. (740 aa)    
Predicted Functional Partners:
AV274_4167
Transmembrane protein.
    
0.974
AV274_2019
Uncharacterized protein.
    
 0.917
AV274_4697
Complement receptor type 2.
    
 0.897
AV274_3231
Uncharacterized protein.
    
 0.897
AV274_2608
Phosphatidylinositol kinase (PIK-F).
    
 0.895
AV274_5678
Transcription initiation factor TFIID subunit 5.
    
 0.894
AV274_6406
Transcription initiation factor TFIID subunit D5.
    
 0.894
AV274_1150
Transcription initiation factor TFIID subunit D4.
    
 0.894
AV274_4839
Growth arrest-specific protein.
   
 0.880
AV274_3126
Uncharacterized protein.
   
 0.880
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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