STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_4481RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family. (516 aa)    
Predicted Functional Partners:
AV274_2596
Uncharacterized protein.
   
 0.974
AV274_5109
DEAD box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
 0.973
AV274_1931
Protein archease.
  
 0.971
AV274_6527
RNA 3'-terminal phosphate cyclase.
  
  
 0.928
AV274_5925
MFS transporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 0.841
AV274_3427
Alpha-L-fucosidase.
    
 0.841
AV274_0315
SWIM-type domain-containing protein.
    
 0.841
AV274_5004
Eukaryotic peptide chain release factor subunit 1.
  
    0.694
AV274_3180
Eukaryotic release factor 1.
  
    0.694
AV274_6235
Uncharacterized protein.
  
  
 0.679
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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