STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_340960S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (467 aa)    
Predicted Functional Partners:
AV274_3102
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
  
 
 0.993
AV274_0260
RL30, ribosomal protein 30 60S large ribosomal subunit.
   
 
 0.991
AV274_5324
Large subunit GTPase 1.
   
 
 0.988
AV274_2793
Ribosome maturation protein SBDS.
   
 
 0.986
AV274_3454
Zinc finger protein.
   
 
 0.978
AV274_5858
Ribosome biogenesis protein NSA2.
   
 
 0.965
AV274_3345
Proliferation-associated protein, metalloprotease family M24X.
   
 
 0.962
AV274_0054
Proliferation-associated protein, metalloprotease family M24X.
   
 
 0.962
AV274_3382
60S ribosomal protein L7a-2.
  
 
 0.950
AV274_3855
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.947
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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