STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_42712-amino-3-ketobutyrate coenzyme A ligase. (407 aa)    
Predicted Functional Partners:
AV274_2024
Syntaxin-71.
  
 
 0.894
AV274_3918
Iron hydrogenase assembly protein, HydE.
  
 
 0.873
AV274_4245
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 
 0.850
AV274_2941
Glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.799
AV274_1649
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
    
 0.798
AV274_4651
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.784
AV274_1421
Threonine synthase.
  
 
 0.772
AV274_5642
Polyketide synthase.
    
0.769
AV274_4259
Estradiol 17-beta-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 0.762
AV274_0655
Lysophospholipase.
    
 0.762
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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