STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_4015FACT complex subunit SPT16. (1005 aa)    
Predicted Functional Partners:
AV274_5475
Transcription elongation factor SPT5.
   
 0.999
AV274_4517
RNA pol II accessory factor CDC73-like protein.
   
 0.999
AV274_0352
RNA polymerase-associated protein CTR9.
   
 0.999
AV274_3455
Plus3 domain-containing protein.
   
 0.998
AV274_1447
Transcription elongation factor SPT4.
    
 0.998
AV274_0521
RNA polymerase II core subunit.
   
 0.998
AV274_4240
Transcription elongation factor SPT6.
   
 0.997
AV274_2300
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
AV274_4211
Uncharacterized protein.
   
 0.993
AV274_3931
DNA-directed RNA polymerase II subunit RPB7.
    
 0.993
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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