STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_3131Rab7L. (207 aa)    
Predicted Functional Partners:
AV274_1970
Vacuolar fusion protein MON1.
    
 0.954
AV274_4626
RING zinc finger-containing protein.
    
 
 0.949
AV274_3200
Uncharacterized protein.
    
 0.935
AV274_6221
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.899
AV274_3707
Rab GDP dissociation inhibitor alpha.
    
 0.899
AV274_1776
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.899
AV274_1681
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.899
AV274_5618
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.876
AV274_3972
Vacuolar protein sorting-associated protein 18.
   
 
 0.873
AV274_2666
Vacuolar protein sorting-associated protein 18.
   
 
 0.873
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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