STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_2324CWF19-like protein. (524 aa)    
Predicted Functional Partners:
AV274_4456
Cell division cycle 5-like protein.
   
 
 0.872
AV274_3718
Cell division cycle 5-like protein.
   
 
 0.872
AV274_4513
Lariat debranching enzyme-like protein.
   
 
 0.785
AV274_3476
Leucine-rich repeat-containing protein.
    
   0.631
AV274_3341
Pre-mRNA-splicing factor syf2.
    
   0.585
AV274_5332
Pre-mRNA-processing factor 19-2.
   
 
 0.574
AV274_2204
WD_REPEATS_REGION domain-containing protein.
   
 
 0.574
AV274_4473
Uncharacterized protein.
    
 
 0.545
AV274_4261
Pre-mRNA-splicing factor SYF1.
    
 
 0.414
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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