STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_2935Threonyl-tRNA synthetase. (685 aa)    
Predicted Functional Partners:
AV274_2663
50S ribosomal protein L15.
   
 
 0.965
AV274_1607
Ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.959
AV274_3313
50S ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
  
 
 0.955
AV274_3045
Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.926
AV274_6235
Uncharacterized protein.
  
 
 0.923
AV274_1600
LSU ribosomal protein L20P; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.922
AV274_0191
Ribosomal protein L21.
  
 
 0.921
AV274_1040
tRNA-binding domain-containing protein.
  
 
 0.918
AV274_1216
Protein dicer-like 2.
  
 
 0.916
AV274_1821
Translation initiation factor IF-2.
  
 0.915
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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