STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_1932RAD21, cohesin protein. (450 aa)    
Predicted Functional Partners:
AV274_5869
Structural maintenance of chromosomes protein.
   
 0.993
AV274_5348
Structural maintenance of chromosomes protein.
   
 0.990
AV274_0167
SCC3, Cohesin complex subunit 3.
   
 0.990
AV274_5277
Sister chromatid cohesion protein PDS5.
   
 0.987
AV274_6195
Serine/threonine-protein kinase PLK.
   
 0.969
AV274_4215
Separin.
   
 0.938
AV274_2710
SMC5, structural maintenance of chromosomes protein 5.
   
 0.930
AV274_4190
Structural maintenance of chromosomes protein 6.
   
 0.923
AV274_4488
Structural maintenance of chromosomes protein.
   
 0.902
AV274_2934
Structural maintenance of chromosomes protein 4.
   
 0.902
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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