STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_1528tRNA uridine 5-carboxymethylaminomethyl modification enzyme gidA. (595 aa)    
Predicted Functional Partners:
AV274_1766
tRNA modification GTPase GTPBP3; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
 0.979
AV274_5169
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis.
  
 0.959
AV274_5579
GTP-binding protein.
  
 0.959
AV274_0991
tRNA-specific 2-thiouridylase mnmA.
  
 0.905
AV274_6375
Sec1-like family protein; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.900
AV274_5809
Methionyl-tRNA formyltransferase.
  
  
 0.619
AV274_1035
Preprotein translocase, Oxa1 family.
  
  
 0.606
AV274_4749
Uncharacterized protein.
  
 
 0.592
AV274_0994
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
   0.585
AV274_0548
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
   0.585
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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