STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_0041Prenyltransferase. (384 aa)    
Predicted Functional Partners:
AV274_3192
Farnesyltransferase alpha subunit.
    
 0.992
AV274_0659
CAAX protease.
    
 0.891
AV274_1506
Farnesyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
   
 0.872
AV274_2858
CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family.
     
 0.869
AV274_2410
Alkyl transferase; Belongs to the UPP synthase family.
     
 0.850
AV274_4510
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like protein.
     
 0.783
AV274_0692
Metalloprotease family M48X.
     
 0.763
AV274_0668
Metalloprotease.
     
 0.763
AV274_4186
Rac2 protein.
    
 0.720
AV274_4721
Rho family GTPase.
    
 0.720
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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