STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_0839ATP-dependent zinc metalloprotease FTSH 8; Belongs to the AAA ATPase family. (631 aa)    
Predicted Functional Partners:
AV274_3050
Prohibitin.
  
 0.911
AV274_0280
Prohibitin.
  
 0.911
AV274_3726
Prohibitin.
  
 0.909
AV274_3924
Prohibitin.
  
 0.909
AV274_2807
Prohibitin.
  
 0.909
AV274_2130
50S ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.883
AV274_5596
LSU ribosomal protein L19P.
  
 
 0.880
AV274_2776
SPFH/Band 7/PHB domain-containing membrane-associated protein.
  
 0.874
AV274_1019
Uncharacterized protein.
  
 0.874
AV274_0665
PHB domain-containing protein.
  
 0.874
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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