STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_1190HECT E3 ubiquitin ligase. (3022 aa)    
Predicted Functional Partners:
AV274_5601
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 0.904
AV274_2608
Phosphatidylinositol kinase (PIK-F).
    
 0.778
AV274_5853
Nsp1p.
   
 0.762
AV274_5198
Nsp1p.
   
 0.762
AV274_4390
Nsp1p.
   
 0.762
AV274_4090
Cullin_Nedd8 domain-containing protein.
    
 0.760
AV274_0996
Anaphase-promoting complex subunit 2; Belongs to the cullin family.
    
 0.760
AV274_1011
Cullin family-like protein.
    
 0.760
AV274_4697
Complement receptor type 2.
    
 0.726
AV274_3231
Uncharacterized protein.
    
 0.726
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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