STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV274_0188tRNA methyltransferase. (398 aa)    
Predicted Functional Partners:
AV274_2656
tRNA methyltransferase.
   
 0.999
AV274_4510
NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like protein.
   
 0.888
AV274_2395
Bystin.
   
 0.881
AV274_3227
NADH-ubiquinone oxidoreductase 19.3 kDa subunit; Belongs to the complex I 20 kDa subunit family.
   
 0.877
AV274_0731
Pre-rRNA-processing protein TSR1.
   
 0.876
AV274_0580
RNA-binding protein NOB1; Belongs to the NOB1 family.
   
 0.868
AV274_0511
RNA-binding protein nob1.
   
 0.868
AV274_2753
RNA-binding protein PNO1-like protein.
   
 0.863
AV274_2817
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
   
 0.862
AV274_0768
RS2, ribosomal protein 2.
   
 0.862
Your Current Organism:
Blastocystis sp. ATCC 50177Nand
NCBI taxonomy Id: 478820
Other names: B. sp. ATCC 50177/Nand II, Blastocystis sp. ATCC 50177, Blastocystis sp. ATCC 50177/Nand II, Blastocystis sp. Nand II, Blastocystis sp. NandII, Blastocystis sp. subtype 1 NandII
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