STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB46655.1Outer membrane porin, OprD family. (449 aa)    
Predicted Functional Partners:
SED61055.1
N-acetylglucosaminyl deacetylase, LmbE family.
  
     0.739
SEB96212.1
Hypothetical protein.
  
     0.731
SEC45569.1
Protein of unknown function.
  
     0.708
SEC84445.1
Protein of unknown function.
  
     0.706
SEB44271.1
Hypothetical protein.
  
     0.694
SEB97321.1
Hypothetical protein.
  
     0.692
SED72197.1
Hypothetical protein.
  
     0.661
SEB47113.1
Uncharacterized protein YjiK.
  
     0.656
SEB42850.1
Hypothetical protein.
  
     0.647
SEB59338.1
Hypothetical protein.
  
     0.646
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.