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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEB56837.1Type VI secretion system protein VasJ. (518 aa)    
Predicted Functional Partners:
SEB57005.1
Type VI secretion system protein ImpH.
 
 
 0.992
SEB56873.1
Type VI secretion system protein ImpB.
 
 
 0.989
SEB56904.1
Type VI secretion system protein ImpC.
 
 
 0.985
SEB56939.1
Type VI secretion system protein.
 
  
 0.975
SEB57222.1
Type VI secretion system protein ImpJ.
 
 
 0.945
SEB56973.1
Type VI secretion system protein ImpG.
 
  
 0.942
SEB57280.1
Type VI secretion system protein ImpL.
 
 
 0.939
SEB86314.1
Type VI secretion system secreted protein VgrG.
 
  
 0.913
SEC07067.1
Type VI secretion system secreted protein VgrG.
 
  
 0.913
SED64825.1
Type VI secretion system secreted protein VgrG.
 
  
 0.913
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.