STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC01674.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
SEC01732.1
Transcriptional regulator, BolA protein family; Belongs to the BolA/IbaG family.
  
    0.900
SED59861.1
Uncharacterized membrane protein affecting hemolysin expression.
  
     0.763
SEB94493.1
CHAD domain-containing protein.
  
     0.736
SEB74843.1
Hypothetical protein.
  
     0.670
SEC95609.1
Arc-like DNA binding domain-containing protein.
  
   
 0.653
SEB40033.1
Protein of unknown function.
  
     0.641
SEC01883.1
ATP-binding cassette, subfamily C; Manually curated.
 
     0.612
SEB87468.1
Extracellular solute-binding protein, family 3.
  
     0.594
SEB98826.1
Outer membrane porin, OprD family.
  
     0.586
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.558
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.