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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC20816.1MFS transporter, AAHS family, benzoate transport protein. (437 aa)    
Predicted Functional Partners:
SEC07169.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.675
SED04115.1
Homoserine dehydrogenase.
   
  0.670
SEC31861.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.622
SEC62822.1
Benzoate 1,2-dioxygenase, alpha subunit.
 
  
  0.615
SEC62769.1
Benzoate 1,2-dioxygenase, beta subunit.
 
  
 0.542
SEC62575.1
Muconolactone delta-isomerase.
 
   
 0.457
SEC20064.1
Muconolactone delta-isomerase.
 
   
 0.453
benD
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.451
SEC02386.1
Chorismate mutase.
   
 
 0.447
SEC62722.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
 
   
 0.439
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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