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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC21764.1Itaconate CoA-transferase; Belongs to the CoA-transferase III family. (399 aa)    
Predicted Functional Partners:
SEC21822.1
2-methylcitrate dehydratase PrpD.
 
 
  0.848
SEC21695.1
(S)-citramalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.797
SEC21877.1
acyl-CoA dehydrogenase.
 
 
  0.777
SEC21931.1
itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase.
 
 
 0.761
SEC30846.1
Hypothetical protein.
  
 
 0.760
SEC55311.1
Acyl transferase domain-containing protein.
  
 0.721
SEC69588.1
itaconyl-CoA hydratase / mesaconyl-C4 CoA hydratase.
 
 
 0.608
SEC07169.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
   
 
 0.575
SEC69387.1
acyl-CoA dehydrogenase.
 
 
  0.524
SEC69639.1
(S)-citramalyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.523
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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