STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC42092.1Outer membrane protein (porin). (341 aa)    
Predicted Functional Partners:
SEB97266.1
Phospholipid-binding lipoprotein MlaA.
   
 
 0.914
SEC27662.1
Phospholipid-binding lipoprotein MlaA.
   
 
 0.914
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
 
 0.911
SEB97321.1
Hypothetical protein.
    
 
 0.894
SEB56699.1
Vitamin B12 transporter.
    
 
 0.833
SEC42033.1
Hypothetical protein.
 
     0.731
SEC99425.1
Serine protease Do; Belongs to the peptidase S1C family.
    
 
 0.647
SED08750.1
Serine protease DegS.
    
 
 0.647
SEC49179.1
Hypothetical protein; Manually curated.
   
 
 0.612
SEB84097.1
OmpA-OmpF porin, OOP family.
   
 
 0.586
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.