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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC53368.1Nucleobase:cation symporter-1, NCS1 family; Belongs to the purine-cytosine permease (2.A.39) family. (468 aa)    
Predicted Functional Partners:
SEC86339.1
Two-component system, NarL family, sensor histidine kinase EvgS.
    
  0.598
SEC55480.1
Threonine/homoserine efflux transporter RhtA.
  
    0.592
SEB84583.1
Glycine betaine/proline transport system permease protein.
   
  
 0.570
SEB84537.1
Glycine betaine/proline transport system substrate-binding protein.
   
    0.567
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
   
    0.542
SED72583.1
Hypothetical protein.
  
     0.484
SEC17355.1
Urocanate hydratase.
  
    0.483
SED66279.1
Urocanate hydratase.
  
    0.483
pyrC
Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.
   
    0.475
carB
Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family.
   
    0.445
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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