STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC56242.1Delta1-piperideine-2-carboxylate reductase; Belongs to the LDH2/MDH2 oxidoreductase family. (342 aa)    
Predicted Functional Partners:
SED53299.1
Solute carrier family 10 (sodium/bile acid cotransporter), member 7.
   
    0.842
SEC69314.1
Sulfopyruvate decarboxylase, alpha subunit.
 
  
 0.835
SEB61346.1
4-hydroxyphenylpyruvate dioxygenase.
    
 0.797
SED64870.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
 0.780
SEB51195.1
Membrane dipeptidase.
  
    0.771
SEC58143.1
Zn-dependent dipeptidase, dipeptidase homolog.
  
    0.771
SEB60419.1
Ornithine cyclodeaminase.
     
 0.751
SEC92567.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.731
allA
Ureidoglycolate lyase; Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source.
     
 0.725
SED08515.1
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.725
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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