STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC57524.1Pilus assembly protein FimV. (814 aa)    
Predicted Functional Partners:
SEB81298.1
Protein of unknown function.
  
 
 
 0.934
SEC96699.1
Hypothetical protein.
    
 
 0.903
SEB49315.1
Chemotaxis protein histidine kinase CheA.
  
  
 0.850
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.800
SED64488.1
Type IV pilus assembly protein PilN.
  
  
 0.792
SEC94010.1
CheW protein.
  
  
  0.767
SEC32284.1
Signal transduction histidine kinase.
     
 0.742
SED55030.1
MJ0042 family finger-like domain-containing protein.
  
     0.739
SEB49148.1
Protein TonB.
  
     0.734
SEB68603.1
CheW protein.
   
 
  0.727
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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