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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC58190.1Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain. (294 aa)    
Predicted Functional Partners:
SEC58143.1
Zn-dependent dipeptidase, dipeptidase homolog.
  
  
 0.947
SEB42067.1
Choline-sulfatase.
 
   0.937
SEC58240.1
Putative ATP-binding cassette transporter.
 
    0.868
SEC07169.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
 
  
 0.830
SEC83992.1
Glutamine amidotransferase.
  
 
 0.827
SEC97850.1
Selenocysteine lyase/Cysteine desulfurase.
  
  
 0.817
SEB57340.1
Serine/threonine-protein kinase Stk1.
 
 
 0.804
SEC87101.1
Acyl-homoserine-lactone acylase.
   
  
 0.787
SEC06371.1
Diaminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.784
SEC86485.1
L-ornithine N5-oxygenase.
  
  
 0.778
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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