STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC62079.1L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (384 aa)    
Predicted Functional Partners:
SEC53708.1
Glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
  0.861
SEC62027.1
Peptide/nickel transport system substrate-binding protein.
     0.797
SEC94583.1
L-fuconolactonase.
 
  
 0.787
SEB93037.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.767
gudD
D-glucarate dehydratase.
 
  
  0.658
SEC61930.1
Peptide/nickel transport system substrate-binding protein.
     0.647
SEC95305.1
L-alanine-DL-glutamate epimerase.
 
  
 
0.644
SEC34745.1
L-alanine-DL-glutamate epimerase.
 
  
 
0.643
SED19713.1
5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.619
garD
Galactarate dehydratase.
 
  
 0.571
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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