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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC71580.1Putative DNA primase/helicase. (738 aa)    
Predicted Functional Partners:
SEC71531.1
Hypothetical protein.
       0.831
SEC71325.1
Phage terminase, large subunit GpA.
 
   
 0.761
SEC71222.1
Phage portal protein, lambda family.
 
   
 0.735
SEC70270.1
Phage tail tape measure protein, TP901 family, core region.
  
   
 0.724
SEC71080.1
Phage major capsid protein E.
  
     0.694
SEC34049.1
ATP-dependent protease ClpP, protease subunit.
  
     0.692
SEC71129.1
Bacteriophage lambda head decoration protein D.
 
   
 0.687
SEC70897.1
Phage baseplate assembly protein V.
  
   
 0.673
SEC70220.1
Hypothetical protein.
  
     0.660
SEC59714.1
Hypothetical protein.
  
     0.617
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.