STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC75285.1tRNA 2-thiouridine synthesizing protein E; Part of a sulfur-relay system. (111 aa)    
Predicted Functional Partners:
SEC75142.1
tRNA 2-thiouridine synthesizing protein D.
 
 
 0.994
SEC75237.1
tRNA 2-thiouridine synthesizing protein B.
 
 0.990
SEC75194.1
tRNA 2-thiouridine synthesizing protein C; Belongs to the DsrF/TusC family.
 
 
 0.980
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.912
SEC75333.1
Anthranilate phosphoribosyltransferase.
 
    0.897
SEC75089.1
Modulator of FtsH protease; Belongs to the BI1 family.
     
 0.604
SEC75382.1
Putative glutathione S-transferase.
       0.595
SEB51275.1
Fe-S oxidoreductase.
 
 
 
 0.566
SED17601.1
D-lactate dehydrogenase.
 
 
 
 0.522
SEB63887.1
NADH dehydrogenase.
    
 0.481
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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