Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEC84445.1Protein of unknown function. (272 aa)    
Predicted Functional Partners:
SED01574.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
 0.854
SEC84397.1
Predicted PurR-regulated permease PerM.
 
     0.785
SEB84691.1
Hypothetical protein.
  
     0.773
SEB90673.1
Hypothetical protein.
  
     0.763
SED02503.1
Hypothetical protein.
  
     0.761
SEB42850.1
Hypothetical protein.
  
     0.756
SEB80514.1
Uncharacterized membrane protein.
  
     0.754
SED10092.1
TIGR02099 family protein.
  
     0.751
SEB81298.1
Protein of unknown function.
 
 
   0.748
SEB91755.1
Beta-barrel assembly machine subunit BamC.
  
  
 0.748
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.