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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC85210.1Signal transduction histidine kinase. (444 aa)    
Predicted Functional Partners:
SEC85265.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.982
SEC36159.1
PAS fold-containing protein.
   
 0.978
SEC32284.1
Signal transduction histidine kinase.
  
0.958
SEC86339.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 0.956
SEC85312.1
Peptidase propeptide and YPEB domain-containing protein.
 
  
 0.943
SEB80128.1
Two component transcriptional regulator, winged helix family.
 0.912
SEB89354.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 
 0.900
SEC43511.1
Signal transduction histidine kinase.
 
 0.900
SEB80853.1
Multi-sensor hybrid histidine kinase.
 
 0.893
SED14020.1
Two-component system, NarL family, sensor histidine kinase EvgS.
 
 
0.886
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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