STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEC96699.1Hypothetical protein. (98 aa)    
Predicted Functional Partners:
SEC35889.1
VRR-NUC domain-containing protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
  
 0.959
SEC61717.1
Exo-poly-alpha-galacturonosidase; Belongs to the glycosyl hydrolase 28 family.
  
 0.942
SEC36763.1
Cellulase (glycosyl hydrolase family 5); Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.935
SEC01049.1
DNA translocase FtsK; Manually curated.
   
 
 0.934
SEC56048.1
TonB-dependent receptor.
    
 
 0.930
SEC57524.1
Pilus assembly protein FimV.
    
 
 0.903
SEB56699.1
Vitamin B12 transporter.
    
 
 0.807
SEC07169.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 
 0.795
SEB96333.1
C-terminal processing peptidase-1. Serine peptidase. MEROPS family S41A; Belongs to the peptidase S41A family.
  
   0.774
SED67903.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
  
   0.774
Your Current Organism:
Pseudomonas taetrolens
NCBI taxonomy Id: 47884
Other names: ATCC 4683, CCUG 560, CFBP 5592, CIP 103299, JCM 20238, LMG 2336, LMG:2336, NCIB 9396, NCIB:9396, NCTC 10697, NRRL B-14, NRRL B-731, NRRL:B:14, NRRL:B:731, P. taetrolens, VKM B-904, VKM:B:904
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.